scopexr

• scopexr package
  • Submodules
  • scopexr.arg_parser_fs module
    • get_merged_config()
    • validate_args()
  • scopexr.arg_parser_psf module
    • get_merged_config()
    • validate_args()
  • scopexr.circle_detection module
    • detect_circle_hough()
    • estimate_circle()
    • is_circle_centered()
  • scopexr.fs_main module
    • main()
  • scopexr.fs_runner module
    • run_pipeline_fs()
  • scopexr.gui module
    • PathSelector
      • PathSelector.is_directory
      • PathSelector.line_edit
      • PathSelector.browse()
      • PathSelector.setText()
      • PathSelector.text()
    • RunThread
      • RunThread.output
      • RunThread.run()
    • ScopeXRApp
      • ScopeXRApp.image_path
      • ScopeXRApp.run_thread
      • ScopeXRApp.fs_config_data
      • ScopeXRApp.psf_config_data
      • ScopeXRApp.append_output()
      • ScopeXRApp.create_advanced_tab()
      • ScopeXRApp.create_fs_tab()
      • ScopeXRApp.create_psf_tab()
      • ScopeXRApp.edit_config()
      • ScopeXRApp.on_run_finished()
      • ScopeXRApp.open_image_file()
      • ScopeXRApp.resizeEvent()
      • ScopeXRApp.run_script()
      • ScopeXRApp.set_app_icon()
      • ScopeXRApp.update_fs_gui()
      • ScopeXRApp.update_image_display()
      • ScopeXRApp.update_psf_gui()
      • ScopeXRApp.update_psf_oversample_controls()
    • create_radio_group()
    • load_config()
    • main()
  • scopexr.image_opening module
    • load_dicom_as_ndarray()
    • load_image()
    • load_png_as_ndarray()
    • load_raw_as_ndarray()
    • load_tiff_as_ndarray()
  • scopexr.mtf_calc module
    • compute_1d_mtf()
    • compute_1d_mtf_from_sino()
    • get_mtf_at_freq()
  • scopexr.plotters module
    • plot_1d_mtf()
    • plot_circle_on_crop()
    • plot_profile_with_gaussian()
    • plot_profiles_and_reconstruction()
    • plot_profiles_with_fwhm()
    • plot_recon_with_lines()
    • plot_sinogram_with_traced_profiles()
  • scopexr.psf_main module
    • main()
  • scopexr.psf_runner module
    • run_pipeline_psf()
  • scopexr.sinogram_recon module
  • scopexr.utils module
    • background_percentile()
    • crop_square_roi()
    • eval_minimum_magnification()
    • eval_minimum_radius()
    • interpolate_nans_1d()
    • save_16bit_tiff()
    • save_and_plot()
    • suggest_os_angle()
  • scopexr.widths_calculator module
    • average_neighbors()
    • compute_fs_width()
    • compute_lsf_from_projection()
    • erf_step()
    • find_extreme_profiles_erf()
    • find_extreme_profiles_gaussian()
    • fw_at_percent_max()
    • fwhm_from_sigma()
    • gaussian()
  • Module contents