Index

A

append_output() (scopexr.gui.ScopeXRApp method)

average_neighbors() (in module scopexr.widths_calculator)

B

background_percentile() (in module scopexr.utils)

browse() (scopexr.gui.PathSelector method)

C

compute_1d_mtf() (in module scopexr.mtf_calc) compute_1d_mtf_from_sino() (in module scopexr.mtf_calc) compute_fs_width() (in module scopexr.widths_calculator) compute_lsf_from_projection() (in module scopexr.widths_calculator)

create_advanced_tab() (scopexr.gui.ScopeXRApp method) create_fs_tab() (scopexr.gui.ScopeXRApp method) create_psf_tab() (scopexr.gui.ScopeXRApp method) create_radio_group() (in module scopexr.gui) crop_square_roi() (in module scopexr.utils)

D

detect_circle_hough() (in module scopexr.circle_detection)

E

edit_config() (scopexr.gui.ScopeXRApp method) erf_step() (in module scopexr.widths_calculator)

estimate_circle() (in module scopexr.circle_detection) eval_minimum_magnification() (in module scopexr.utils) eval_minimum_radius() (in module scopexr.utils)

F

find_extreme_profiles_erf() (in module scopexr.widths_calculator) find_extreme_profiles_gaussian() (in module scopexr.widths_calculator)

fs_config_data (scopexr.gui.ScopeXRApp attribute) fw_at_percent_max() (in module scopexr.widths_calculator) fwhm_from_sigma() (in module scopexr.widths_calculator)

G

gaussian() (in module scopexr.widths_calculator) get_merged_config() (in module scopexr.arg_parser_fs) (in module scopexr.arg_parser_psf)

get_mtf_at_freq() (in module scopexr.mtf_calc)

I

image_path (scopexr.gui.ScopeXRApp attribute) interpolate_nans_1d() (in module scopexr.utils)

is_circle_centered() (in module scopexr.circle_detection) is_directory (scopexr.gui.PathSelector attribute)

L

line_edit (scopexr.gui.PathSelector attribute) load_config() (in module scopexr.gui) load_dicom_as_ndarray() (in module scopexr.image_opening)

load_image() (in module scopexr.image_opening) load_png_as_ndarray() (in module scopexr.image_opening) load_raw_as_ndarray() (in module scopexr.image_opening) load_tiff_as_ndarray() (in module scopexr.image_opening)

M

main() (in module scopexr.fs_main) (in module scopexr.gui) (in module scopexr.psf_main) module scopexr scopexr.arg_parser_fs scopexr.arg_parser_psf scopexr.circle_detection scopexr.fs_main scopexr.fs_runner scopexr.gui scopexr.image_opening scopexr.mtf_calc scopexr.plotters scopexr.psf_main scopexr.psf_runner scopexr.utils scopexr.widths_calculator

O

on_run_finished() (scopexr.gui.ScopeXRApp method)

open_image_file() (scopexr.gui.ScopeXRApp method) output (scopexr.gui.RunThread attribute)

P

PathSelector (class in scopexr.gui) plot_1d_mtf() (in module scopexr.plotters) plot_circle_on_crop() (in module scopexr.plotters) plot_profile_with_gaussian() (in module scopexr.plotters)

plot_profiles_and_reconstruction() (in module scopexr.plotters) plot_profiles_with_fwhm() (in module scopexr.plotters) plot_recon_with_lines() (in module scopexr.plotters) plot_sinogram_with_traced_profiles() (in module scopexr.plotters) psf_config_data (scopexr.gui.ScopeXRApp attribute)

R

resizeEvent() (scopexr.gui.ScopeXRApp method) run() (scopexr.gui.RunThread method) run_pipeline_fs() (in module scopexr.fs_runner)

run_pipeline_psf() (in module scopexr.psf_runner) run_script() (scopexr.gui.ScopeXRApp method) run_thread (scopexr.gui.ScopeXRApp attribute) RunThread (class in scopexr.gui)

S

save_16bit_tiff() (in module scopexr.utils) save_and_plot() (in module scopexr.utils) scopexr module scopexr.arg_parser_fs module scopexr.arg_parser_psf module scopexr.circle_detection module scopexr.fs_main module scopexr.fs_runner module scopexr.gui module scopexr.image_opening module

scopexr.mtf_calc module scopexr.plotters module scopexr.psf_main module scopexr.psf_runner module scopexr.utils module scopexr.widths_calculator module ScopeXRApp (class in scopexr.gui) set_app_icon() (scopexr.gui.ScopeXRApp method) setText() (scopexr.gui.PathSelector method) suggest_os_angle() (in module scopexr.utils)

T

text() (scopexr.gui.PathSelector method)

U

update_fs_gui() (scopexr.gui.ScopeXRApp method) update_image_display() (scopexr.gui.ScopeXRApp method)

update_psf_gui() (scopexr.gui.ScopeXRApp method) update_psf_oversample_controls() (scopexr.gui.ScopeXRApp method)

V

validate_args() (in module scopexr.arg_parser_fs) (in module scopexr.arg_parser_psf)